bcbio-nextgen
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Somatic (cancer) variants
Bulk RNA-seq
Counting cells and transcripts for inDrops3 data
PureCN analysis of tumor-only samples
HLA typing
Small germline variants
3’ DGE
Structural variant calling
ATAC-seq
Methylation
Variant calling using bulk RNA-seq data
Detecing gene fusions with bulk RNA-seq data
fast RNA-seq
Disambiguation
smallRNA-seq
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Parallel execution
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Single cell RNA-seq analysis
Cancer tumor-normal variant calling
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bcbio-nextgen
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Detecing gene fusions with bulk RNA-seq data
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Detecing gene fusions with bulk RNA-seq data
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