bcbio-nextgen
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Getting started
----------User stories----------
Somatic variants
Bulk RNA-seq expression
Single cell RNA-seq
HLA typing
Germline small variants
3prime digital gene expression
Structural variants
ChIP/ATAC-seq
Methylation
Bulk RNA-seq variants
Bulk RNA-seq fusions
fast RNA-seq
human/mouse disambiguation
small RNA-seq
----------Infrastructure----------
Installation
Configuration
Parallel execution
Outputs
Common Workflow Language (CWL)
Cloud
Development
----------Misc----------
Users
Internals
Presentations
Teaching
Citations
bcbio-nextgen
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Detecing gene fusions with bulk RNA-seq data
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Detecing gene fusions with bulk RNA-seq data
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